A. Description of Channels
- Channels form holes or pores in membranes
- They are integral membrane proteins
- Typically 200-1000 amino acids for eukaryotic ion channels
- Peptide antibiotics which form pores such as gramicidin are 20 amino acids
- Most mammalian channels have multiple transmembrane domains
- Allow for various type sof communication
- Cell-cell communication through gap junctions (see below)
- Cell-outside communication
- Cell cytosol and organelles - including nuclear pores, mitochondria
- Summary of Structure and Function
- Form hole or pore in lipid membrane, traversing bilayer
- Allow for passage of millions of molecules (usually ions) per second
- Most channels are remarkably selective for specific ions
- Small molecular conformational changes allow gating of channels
- Gating is period opening and closing of channel
- Sudden opening of channel allows burst of current (picoAmpere levels)
- Gating leads to "square wave" function of single channels
- Net ion movements are curved waves due to summing of gated channel effects
- Major Organs with Ion Channels
- All organs have critical ion channels
- Excitable Tissue: Heart, Brain, Muscle
- Kidney - all tubular epithelia
- Pulmonary epithelia - trachea and bronchi
- Gastrointestinal epithelia
- Diseases due to mutations in channel genes are called "channelopathies"
B. Physics of Ion Channels
[Figure] "Ion Channels: Ohm's Law"
- Potential Energy Stored as Chemical Gradient
- Cells utilize energy to initiate and maintain chemical gradients across membranes
- Up to 50% of a cell's total expenditure may be used in maintaining gradients
- When ions are distributed unequally across a membrane, they form a gradient
- These ion gradients are batteries, with stored potential energy (potential)
- The potential stored in the gradient (V) can be used to drive additional ion currents
- Ohm's Law: I (current, amperes) = G (conductance, siemens) x V (volts)
- G is the reciprocal of the resistance (R) of the system (usually in ohms)
- In reality, channels display a non-linear relationship between current and voltage
- Thus, the value of G changes for any particular voltage (G is a function of V)
- This change in G is called rectification
- Rectification can be inward or outward, depending on how G changes as a function of V
- Thus, G may be effectively 0 at some voltages, then increase above a threshhold level
- Current outward is taken as positive (for positive ions)
- Nernst Potential for an Ion
[Figure] "Ion Channels: Ohm's Law"
- The point on the current-voltage curve where current=0 is the Nernst Potential (NP)
- The NP is the voltage where no current flows for that particular ion
- The NP is also where the ion current across the membrane reverses direction
- In equation format, V (volts) = (I/G) + NP
- NP is also called the reversal potential for an ion
- Reversal (Nernst) Potentials for some Ions
- These vary between cell types (channel types); common ranges are given
- Na+ ~ 70mV (sodium normally moves out)
- K+ -70 to -100 mV (potassium accumulates in cells)
- Cl- is -30 to -65 mV (chloride moves and out)
- Ca2+ is +150mV (calcium is sequestered and extracellular)
- Resting membrane voltage is around -80mV for many cell types
- Gating of Channels
- Gating (opening and closing) of channels allows for specific regulation
- Gating can be described by various parameters
- One important parameter is Po, the fraction of time (probability) a channel spends open
- Po therefore ranges from zero (always closed) to 1.0 (always open)
- G, the conductance, may be rewritten as: G = N x Po x g
- N is number of channels in membrane and g is the conductance of single channel
- These equations show how channel function can be modulated
- Modulation of Channel Function
- Changing the number (N) of channels in a membrane
- Alteration in the ionic conductance of single channel (g)
- Alterations in g or Po can occur in a number of ways including changing lipid membrane
- Phosphorylation and dephosphorylation can alter g or Po
- Interactions with other proteins, cytosolic factors, or cytoskeleton may alter Po (or g)
- Voltage changes in the cell can alter Po
- Common Gating Modifiers
- Voltage gated channels
- Intracellular molecules: as in calcium-activated channels
- Cyclic nucleotides: as in cGMP or cAMP activated channels
- G-protein gated channels
- Ligand gated channels
- A clear understanding of the chloride and other anion channels is not yet available
C. Overview of Ion Channel Structures
- Majority of eukaryotic channels are multispan transmembrane proteins
- Most channels formed by multiple polypeptides (same or different subunits)
- Heteromeric Channels
- Voltage gated K+, Na+ and Ca2+ channels
- Major alpha subnit (can form simple pore in membranes)
- Other subunits form modulatory and/or regulatory functions
- Homomeric Channels
- CIC Chloride Channels
- Six Membrane Spanning Segments
- Voltage gated ion channels - major channels in nerve and muscle
- Cyclic nucleotide gated (CNG) cation channels
- Aquaporins
- Four Membrane Spanning Segments
- Majority of ligand gated channels fall into this class
- Nicotinic Acetylcholine Receptor
- Gama-aminobutyric acid (GABAa) Receptor
- Ionotropic Glycine Receptor
- Inhibitory Glutamate Receptor
- Serotonin Type 3 (5-HT3) Receptor
- Either anions (glycine, I-Glut, GABAa) or cations (nAChR, 5-HT3) are conducted
- Likely consist of five subunits, either homopentamers or heteropentamers
- Each alpha polypeptide has four membrane spanning alpha helices
- Two Membrane Spanning Segments
- Inwardly rectifying K+ channels
- ATP-sensitive K+ channels
- Amiloride-sensitive epithelial Na+ channels
- ATP-gated cation channels (P2X or Purinergic Receptors)
D. Summary of Voltage Gated Channels [11,20]
- Major cation channels for excitation in nerve and muscle
- High selectivity for specific cations
- Each channel consists of 2 or more subunits alpha, beta, gamma or delta
- In general, the alpha subunit is the major pore structure protein
- alpha subunits contain alpha helical membrane spanning domains
- A total of 24 membrane spanning domains is found in all channels
- In K+ channel, this comes from 4 alpha polypeptides, each with one 6-membrane span
- In Na+ and Ca2+ channels, each alpha polypeptide has 4 domains of 6-membrane spans
- Open channels can conduct ions at rates near free diffusion limits
- Opening of channels is highly regulated
- Highly regulated opening and closing of channels dependent on voltage
- The alpha polypeptides are intrinsically voltage dependent for opening
- At non-permissive voltages, the channels are at rest
- Voltage changes induce conformational changes in channels, allowing them to open
- The beta, gamma, and/or delta subunits can alter the voltage dependent properties
- Inactivation
- Once open (at appropriate voltage), channels close in milliseconds to seconds
- This inactivation is believed to occur by channel plugging itself
- "Hinged-lid" and "ball on chain" mechanisms of plugging have been postulated
- beta, gamma and/or delta subunits can alter inactivation properties
- Major Ions and Membrane Potentials [11]
- Calcium - passive flux inward, current inward, depolarization
- Sodium - passive flux inward, current inward, depolarization
- Potassium - passive flux outward, current outward, repolarization
- Chloride - passive flux inward, current outward (negative charge), repolarization
E. Sodium (Na+) Channels [29]
- Voltage Gated, Na+(V)
- Six membrane spanning domains
- alpha subunit has 4 domains of 6-membrane alpha helices
- Therefore, only one alpha subunit is required for single channel formation
- Selectivity for Na+ > 10 fold other ions
- Critical for normal cardiac and CNS functions
- Gating mechanisms are fairly well understood for Na+(V) channels
- Depending on gate conformation, Na+(V) exist in resting, active and inactive forms
- Mutations in Na+ channels found in various myotonias
- Gating [11]
- Two major gates, m and h, have been described for Na+(V) channels
- The gates exist in different parts of the same (alpha) channel polypeptide
- Structural motifs responsible for gating m (rapid) and h (slow) gates understood
- There are three phsiologic conformations for these gates
- These conformations correspond exactly to the forms of Na+(V) channels
- In the resting, net closed state, the m gate is closed and h gate is open
- The m gate opens rapidly on depolarization from the resting state
- The h gate, open in the resting state, begins to close on depolarization
- The inactive (closed) state has the m gate open and the h gate closed
- The refractory period is due to the closure of the h gate
- As repolarization occurs, the m gate closes and the h gate slowly opens
- Epithelial Na+ channels (amiloride sensitive)
- Non-voltage gated channels
- Found on apical membranes of many NaCl-absorbing epithelia
- Crucial for transepithelial salt trasport
- Blocked by the potassium sparing diuretic amiloride
- Bronchiolar epithelium and renal collecting duct contain major activities
- Renal channel is discussed below
- Mutations in epithelial sodium channel subunits can lead to blood pressure changes [21]
- Activating mutations in ß or gamma cause Liddle's syndrome (pseudoaldosteronism) [16]
- T594M mutationin ß-subunit are associated with hypertension in black women [18]
- Bronchiolar channels can be blocked with amiloride, useful in cystic fibrosis (CF)
- Mutant CF chloride channels lead to hyperexpression of these Na channels
F. Potassium (K+) Channels [27]
- Summary of K+ Channels [11]
- Inwardly (Anomolous) Rectifying (IR) K+ channel (Kir)
- Outward (Delayed) Rectifier (Ko)
- Transient outward current (Ktr)
- Calcium activated K+ channel (Kca)
- Sodium activated K+ channel
- ATP sensitive K+ channels (Katp)
- Acetylcholine activated K+ channel
- Arachidonic acid-activated K+ channel
- Voltage Gated (Kv)
- Simplest of voltage-gated channels
- alpha subunit has six membrane spanning alpha helices
- Several different alpha subunits exist and can form homotetramers or heterodimers
- Four polypeptides are required for K+ channel
- ß-subunit is entirely cytosolic and alters voltage dependence of alpha subunits
- Inwardly Rectifying (IR) K+ Channel (Kir)
- Inward rectification means that inward flow of K+ is greater than outward flow at equal but opposite driving forces
- Some of the Kir channels are strongly rectifying, with little outward flow at all
- All have two-membrane spanning alpha helices with a loop between them
- IR caused by plugging internal mouth of channel
- Magnesium (Mg2+) is usual plugging molecule for weak IR channels
- Polyamines (spermine, spermidine, putrescine, cadaverine) and Mg2+ block strong IR
- Note that "normal" K+ ion flow is outward (see above), so this channel is "anomolous"
- HERG channel plays key role in repolarization, affects QTc interval and prolongation
- Outward (Delayed) Rectifying K+ Channel
- Channels open when the heart is depolarized
- Carry the heart's major depolarizing current
- Heterogeneity in these channels contributes to variations in action potential durations
- Dofetilide (Tikosyn®), an anti-arrhythmic, selectively blocks this channel [26]
- ATP sensitive K+ channels (Katp)
- Found in pancreatic ß-cells, involved in insulin secretion
- Epithelial ATP-regulated secretory cheannel (Kir1, ROMK), found in kidney
- Also found in muscle, heart, CNS
- Endothelial Katp and Kca critical for regulation of blood vessel diameter [31]
- May be involved in protection from cell death during ischemia
- Weak inward rectification, inhibition by intracellular ATP
- Nicorandil opens Katp leading to vasodilation, reduction of angina [34]
- Pancreatic ß-Cell Katp Channel
- Formed by association of Kir6.2 subunits with SUR1, another Kir protein
- SUR1 is the sulfonylurea receptor and modulates channel function
- Stoichiometry of SUR1 to Kir6.2 is not presently known
- SUR1 is a member of the ABC (ATP binding cassette) family of proteins (see below)
- Sulfonylureas bind SUR1, inhibit the Katp channel, and stimulate insulin secretion
- SUR1 is mutated is familial persistent hyperinsulinemic hypoglycemia of infancy
- Meglitinides bind and close these channels, mainly in presence of glucose [33]
- Acetylcholine activated K+ channel (Kach)
- Vagal stimulation can hyperpolarize resting cardiac cells
- Mediated through acetylcholine receptors, activates Gi and opens Kach
- This slows muscle firing and reduces heart rate
- Similar transduction cascade occurs with adenosine binding to purinergic receptors
- Channel consists of heterodimer with two inwardly rectifying K+ channel proteins
- Arachidonic acid-activated K+ channel (Kaa)
- Lipid activated potassium channels
- Fatty acids liberated in ischemic heart activate these receptors
- Result is shortened cardiac action potential due to more rapid repolarization
- Acidosis, which promotes K+ exit from cells, also shortens action potential
- Long QT Syndromes
- Cardiac Potassium channels linked to Romano-Ward Long QT syndrome [2,3]
- Homozygous mutations in KVLQT1 gene, modulates K+ channel
- This mutation is linked to Jervell and Lange-Nielsen Long QT Syndrome [4]
- The LQT2 Syndrome is a mutation in the HERG gene
G. Calcium (Ca2+) Channels [24,28]
- Introduction
- Calcium ion fluxes play major roles in cell activation and death
- Calcium is absolutely required for all types of muscle contraction
- Calcium involved in protease activation ("capains")
- Calcium involved in transcriptional regulation through calmodulins and related proteins
- Calcium critical in many types of signal transduction as second and third messengers
- Reperfusion damage is calcium dependent
- Types of Channels
- Voltage Gated - multiple types of voltage dependent Ca channels (L-, N-, etc.)
- L-type - long acting (slowly inactivating) calcium channels (alpha-1a subunit)
- N-type - neuronal channels associated with pain (alpha-1b subunit)
- T-type - transient calcium channels (alpha 1g, 1h, or 1i subunits)
- P/Q-type - major expression is in brain (Perkinje tissues)
- Receptor operated Calcium channels - including IP3 / cGMP-gated channels
- Intracellular (sarcoplasmic) calcium release channel (ryanodine receptor)
- Ryanodine receptor on sarcoplasmic tubules interact with longitudinal tubule L channels
- Tetrodotoxin (TTX) sensitive calcium channel (I-Ca-TTX) also carries Na+ [28]
- Overview of Voltage Gated Ca2+ Channels [20,25]
- These Ca2+ channels have >1000 fold selectivity for Ca2+ over Na+ or K+
- Complex of 4 or 5 subunits including alpha-1, alpha-2, ß, gamma, and delta
- The large alpha-1 polypeptide has 4 domains of 6-membrane alpha helices (Ca2+ specificity)
- Therefore, only one alpha subunit is required for single channel formation
- ß subunits are entirely cytosolic
- L-Type
- Major component of transverse tubules in muscle
- Majority of available calcium blockers bind to L-type channels
- alpha1A - CAG repeats found in 3' end, polymorphic, no known links to disease
- alpha1C - splice variants are known to affect inactivation kinetics
- In addition, alpha1c splice variants affect activities of dihydropyridine calcium blockers
- Mutant L-type channels are found in hypokalemic periodic paralysis [5]
- L type channels are prevelant in cardiac muscle as well as SA and AV nodes
- L type channels are also prevalent in vascular smooth muscle
- Additional subunits of L channel are regulatory (a2/d, ß, and gamma subunits) [7]
- Dihydropyridines are the most potent blockers of these channels
- N-Type
- Involved in pain perception, pre-synaptic terminals
- Ziconotide (SNX-111) blocks N-type calcium channels and is active in severe pain [35]
- T-Type
- Transient type calcium channels
- Prevalent in vascular smooth muslce and in the SA node of the heart
- In SA node, these channels play a role in pacemaker activity
- In addition, these channels play a role in growth stimulation of cardiac cells
- Blocking these channels reduces heart rate (SA node) and blood pressure
- In addition, blocking channels may prevent cardiac hypertrophy and remodelling
- Mibefradil is a potent blocker of these channels (withdrawn from market)
- P/Q-Type [6]
- Brain specific forms, mainly Perkinje cells
- Gene CACNA1A codes the alpha-1a subunit of the P/Q-type channel
- Mutations in CACNA1A linked with several human diseases
- Familial hemiplegic migraine - with or without cerebellar signs [30]
- Episodic ataxia 2
- Spinocerebellar ataxia 6
- Antibodies to P/Q channels present in Lambert-Eaton myasthenia [5]
- Mutation in P/Q channel can cause absence seizures [32]
- Ryanodine Receptor (RyR) [7]
- Calcium is released through the sarcolemmal calcium release channel
- This channel binds ryanodine and has been called the ryanodine receptor (coded by Ryr 1)
- Several mutations in the ryanodine channel appear to cause malignant hyperthermia
- This channel is also called the calcium release channel
- Dantrolene, an antidote for malignant hyperthermia, causes closure of the channel
- Several different RyR genes have been clones (skeletal, cardiac, and non-muscle)
- Malignant hyperthermia is autosomal dominant disease manifesting with anesthesia
- Inositol Triphosphate (IP3) Receptor
- IP3 binds to intracellular receptors and intiates calcium influxes
- There are several variants of the IP3 receptors, often coexpressed in tissues
- Miscellaneous Effects
- Amlodipine may have protective effects in viral myocarditis by blocking nitric oxide [8]
- Mibefradil may have protective effects in viral myocarditis and stroke
H. Cyclic Nucleotide Gated Channels
- Cyclic GMP (cGMP) appears to be the major regulator for these channels
- Key Organ Systems
- Sight - retinal rod and outer cone segments
- Smell - olfactory receptors
- Kidney
- Cardiac - pacemaker activity in sinoatrial (SA) node
- Majority of cGMP gated channels are nonselective for cations, but do prefer Ca2+
- Composed of heteromultimers of alpha and ß subunits
- alpha subunits have 6-membrane spanning alpha helices similar to K+ channels
- alpha subunits have intrinsic channel forming function
- ß subunits modulate alpha function
- Stoichiometry of alpha and ß subunits is not known
- Cystic fibrosis chloride channel (CFTR) is also regulated by cAMP and protein kinase A
I. Chloride (Anion) Channels
- Major role is to help stabilize resting membrane potential
- This is because the Nernst Potential for Cl- is close to that of resting cells
- Structural Classes
- Ligand gated: Glycine and GABAa Receptors
- Voltage gated: CIC gene family
- CFTR: cystic fibrosis transmembrane conductance regulator (~7pS conductance)
- Outwardly Rectifying Anion Channels
- Calcium activated chloride channels (~20pS conductance)
- CIC Gene Family
- Nine different members have been found in mammals
- These are designated CIC-1 to CIC-7, CIC-Ka and CIC-Kb
- CIC-2, CIC-6 and CIC-7 are found ubiquitously
- CIC-1 - skeletal muscle
- CIC-3, -4, -5, CIC-Ka and CIC-Kb in kidney
- Channels are 90-100K, with about 1000 amino acids
- Mutations in CIC-1 cause various inherited myotonias
- Outwardly Rectifying Anion Channels
- Involved in cell volume regulation, both swelling and shrinkage
- Channels are activated on cell swelling
- Mediate efflux of anions after cell swelling
- I(Cln) or ORCC is the major cloned outwardly rectifying anion (chloride) channel
- ORCC
- Outwardly rectifying chloride channel
- Variable conductance of chloride as a function of transmembrane voltages
- I(Cln) contains 4 ß-strands similar to those found in bacterial porins
- I(Cln) may be actual structural protein for the channel as a homodimer
- Mitochondrial voltage-dependent ion channel has similar structure
- ORCC conductance of chloride is modulated by CFTR
J. Water Channels (Aquaporins)
- Found mainly in erythrocytes and in apical membranes of kidney collecting ducts
- Permit very high water permeability
- Six different aquaporin genes, AQP0 to AQP5, have been identified
- APQ0 found in the lens
- APQ1 is erythrocyte water channel
- Many of the aquaporins are found in kidney
- Inactivating mutations in AQP2 lead to one form of nephrogenic diabetes insipidus
- Therefore, AQP2 is ligand sensitive for antidiuretic hormone (ADH, vaspopressin)
- Structure is unlike the ion channels previously described
- Appear to be homotetramers, with each polypeptide having 6-membrane spans
- However, the polypeptides are folded into 2 domains of 3 transmembrane segments
K. Gap Junctions
- Allow direct transfer of small molecules and ionic currents between cells
- Each cell contributes half of the gap junction
- Gap junctions are composed of oligomeric assembly of connexons
- Connexons consist of hemxamer of integral membrane proteins called connexins
- There are >11 different types of connexins
- These connexins have tissue specificity and transport specificity
- Common Tissues
- Glial Cells
- Epithelial Cells
- Smooth muscle cells
- Cardiac muscle cells
- Very rare in mammalian neurons
- Pathology of Gap Junctions
- Connexin-26 mutations associated with sensorineural hearing loss [3]
- Connexin-32 mutations associated with X-linked Charcot Marie Tooth neuropathy [4]
L. Renal Tubule Channels
[Figure] "Renal Tubular Cells"
- Renal Collecting Duct Na+ Channel
- Found mainly in apical membranes of principal cells of collecting duct
- Provides Na+ entry for aldosterone regulated Na+/K+ pump use (basolateral membrane)
- This renal channel has alpha, ß, and gamma subunits
- Each polypeptide has two membrane spanning alpha-helices with large loop between each
- alpha subunits have intrinsic pore-forming activities
- Gamma and ß subunits modulate activity and increase currents
- Mutations found in channel cause various clinical syndromes [16,18]
- Glucose Transporter
- Proton Transporter
- H+/K+ Antiporter
- HCO3-/Cl- Antiporter
- Potassium (K+) Channel (apical)
[Figure] "Renal TAL Cell" - K+ Pump
- Na+/K+ Antiporter - ATP dependent (basal side)
- Na+/K+/2Cl- loop diuretic sensitive cotransporter (lumenal side)
- Water Transporters (aquaporin channels)
N. ABC Protein Family
- ATP binding casette (ABC) family
- SUR1 protein
- Sulfonylurea receptor
- Part of Kir from pancreatic ß-cells (see above)
- CFTR [14,19]
- Chloride channel, mutated in CF
[Figure] "CF Ion Transport Defect" - Always plays regulatory role (CF transmembrane conductance regulat
- P-Glycoproteins (Pgp-1)
- MDR1 gene, codes for enzyme which pumps out small molecule toxins
- Mediates resistance to various chemotherapeutic agents
- Related proteins include mrp1, others
- ALD Protein
- Mutations found in patients with peroxisome biogenesis
- Likely exists as functional homodimer
- Mutated in adrenoleukodystrophy
- PMP-70 Protein
- Mutations in patients with lipid disorders, Zellweger Syndrome
- Likely exists as functional homodimer
- Of the ABC proteins, only CFTR is clearly an ion channel
O. Gastrointestinal Transporters (incomplete listing)
- Gastric H+/K+ Antiporter
- Small Intestinal Transporters (mainly absorption)
- Colonic Transporters (mainly secretion)
- Congenital Chloridorrhea [15]
- Chronic diarrhea beginning as infants
- Autosomal recessive trait due to inability to reabsorb chloride in GI tract
- Defect in ileal and colonic chloride-bicarbonate exchange transporter
- Moderate to severe hypokalemia and hypomagnesemia
- Blood hypochloremia (non-anion gap metabolic alkalosis)
- Low urinary chloride excretion
- Treatment: Oral sodium and potassium chloride, IV fluids
- Proton-pump inhibitors are effective and reduce gastric chloride secretion and diarrhea
- Duodenal Metal Transporters
- DMT-1 (same as NRAMP-2) protein is a membrane transporter protein
- DMT-1 increases absorption of iron and other divalent metal cations
- DMT-1 transport is an active, hydrogen-coupled system
- DMT-1 transport is located on the apical (luminal) side of duodenal mucosa
- DMT-1 mRNA levels are elevated in patients with hereditary hemochromatosis
- Sodium-linked glucose transporter (intestine, kidney) [23]
P. Ligand-Sensitive Channels
- Purinergic Receptors (P2X, ATP-gated Cation Channels)
- Activated by extracellular ATP
- Found on neurons and a large number of other cells
- ATP likely acts as a neurotransmitter at some nerve-nerve and nerve-muscle junctions
- May play role in pain sensation
- At least 7 P2X receptors are now known
- Two-membrane spanning segments; each with two alpha helices
- Between the two alpha helices is a large, glycosylated extracellular loop
- GABA-Receptors
- Major inhibitory neurotransmitter in brain
- Multiple subtypes of GABA-R are known
- Conduct anions
- Targets for many epileptic agents
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